Publications

Zhao Z, Baltar F, Herndl GJ. Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Microbiology Spectrum. 2024 May 2;12(5):e0303623. Epub 2024. doi: 10.1128/spectrum.03036-23

Zhao Z , Amano C , Reinthaler T, Orellana MV, Herndl GJ. Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Science Advances. 2024 May;10(20):eadn5143. doi: 10.1126/sciadv.adn5143

Cai Z, Li W, Hager S, Wilson JL, Afjehi-Sadat L , Heiss EH et al. Targeting PHGDH reverses the immunosuppressive phenotype of tumor-associated macrophages through α-ketoglutarate and mTORC1 signaling. Cellular and Molecular Immunology. 2024 May;21(5):448-465. Epub 2024 Feb. doi: 10.1038/s41423-024-01134-0

Cowan DA, Albers SV, Antranikian G, Atomi H, Averhoff B, Basen M et al. Extremophiles in a changing world. Extremophiles: life under extreme conditions. 2024 Apr 29;28(2):26. 26. doi: 10.1007/s00792-024-01341-7

Kendlbacher V, Winter TMR , Bright M. Zoothamnium mariella sp. nov., a marine, colonial ciliate with an atypcial growth pattern, and its ectosymbiont Candidatus Fusimicrobium zoothamnicola gen. nov., sp. nov. PLoS ONE. 2024 Apr 1;19(4):e0300758. e0300758. doi: 10.1371/journal.pone.0300758

Nasershariat M, Pishvaie MR, Boozarjomehry RB, Waldherr S. A dynamic model of growth phase of bio-conversion of methane to polyhydroxybutyrate using dynamic flux balance analysis. Bioprocess and Biosystems Engineering. 2024 Apr;47(4):463-474. doi: 10.1007/s00449-024-02966-w

Lintner M, Schagerl M, Lintner B, Wanek W, Golen J, Tyszka J et al. Impact of pesticides on marine coral reef foraminifera. Marine Pollution Bulletin. 2024 Apr;201:116237. Epub 2024 Mar 8. doi: 10.1016/j.marpolbul.2024.116237

Balaican D, Teubner K, Tudor IM, Nichersu I, Burada A, Trifanov C et al. Water Energy Food Nexus in Urbanizing Wetlands: Challenges and Solutions Explored through Choremes and Focus Maps. Water. 2024 Apr;16(7):1-21. 922. doi: 10.3390/w16070922

Bubl M, Heinz P , Wanek W , Schagerl M , Hofmann T, Lintner M. Impact of heavy metals (Cu, Fe, Pb, Zn) on carbon and nitrogen uptake of the diatom-bearing benthic foraminifera Heterostegina depressa. Heliyon. 2024 Mar 30;10(6):e27229. doi: 10.1016/j.heliyon.2024.e27229

Kushkevych I, Martínková K, Mráková L, Giudici F, Baldi S, Novak D et al. Comparison of microbial communities and the profile of sulfate-reducing bacteria in patients with ulcerative colitis and their association with bowel diseases: a pilot study. Microbial Cell. 2024 Mar 14;11(1):79-89. doi: 10.15698/mic2024.03.817

Scharhauser F, Saavedra DEM, Pröts P, Ott JA, Geier B, Gruber-Vodicka HR et al. Revision of the genus Robbea (Stilbonematinae: Desmodoridae), worldwide abundant marine nematodes with chromophoric Fe–Br inclusions and the description of a new stilbonematine genus. Zoological Journal of the Linnean Society. 2024 Mar 1;203(1):zlae005. doi: 10.1093/zoolinnean/zlae005

Radler P , Loose M. A dynamic duo: Understanding the roles of FtsZ and FtsA for Escherichia coli cell division through in vitro approaches. European Journal of Cell Biology. 2024 Mar;103(1):151380. doi: 10.1016/j.ejcb.2023.151380

Zhang S, Ghatak A, Mohammad Bazargani M, Kramml H, Zang F, Gao S et al. Cell-type proteomic and metabolomic resolution of early and late grain filling stages of wheat endosperm. Plant Biotechnology Journal. 2024 Mar;22(3):555-571. Epub 2023 Dec. doi: 10.1111/pbi.14203

Grasset C, Einarsdottir K, Catalán N, Tranvik LJ, Groeneveld M, Hawkes JA et al. Decreasing Photoreactivity and Concurrent Change in Dissolved Organic Matter Composition With Increasing Inland Water Residence Time. Global Biogeochemical Cycles. 2024 Mar;38(3):e2023GB007989. doi: 10.1029/2023GB007989

Kudapa H, Ghatak A, Barmukh R, Chaturvedi P, Khan A, Kale S et al. Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). Plant Genome. 2024 Mar;17(1):e20337. doi: 10.1002/tpg2.20337

Bahiraii S, Brenner M, Weckwerth W , Heiss EH. Sulforaphane impedes mitochondrial reprogramming and histone acetylation in polarizing M1 (LPS) macrophages. Free Radical Biology and Medicine. 2024 Mar;213:443-456. doi: 10.1016/j.freeradbiomed.2024.01.029

Zekri MA, Lang I. Automated Segmentation and 3D Reconstruction of Different Membranes from Confocal Z-Stacks. In Kriechbaumer V, editor, The Plant Endoplasmic Reticulum: Methods and Protocols. 2. ed. Humana, New York: Springer. 2024. p. 353-370. (Methods in Molecular Biology, Vol. 2772). doi: 10.1007/978-1-0716-3710-4_27

Zvereva AS, Klingenbrunner M, Teige M. Calcium signaling: an emerging player in plant antiviral defense. Journal of Experimental Botany. 2024 Feb 28;75(5):1265-1273. Epub 2023 Nov 6. doi: 10.1093/jxb/erad442

Fadeev E , Hennenfeind JH , Amano C , Zhao Z, Klun K, Herndl GJ et al. Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. mSystems. 2024 Feb 20;9(2):e01264-23. Epub 2024 Jan 23. doi: 10.1128/msystems.01264-23

Salazar-Alekseyeva K, Herndl GJ, Baltar F. Influence of Salinity on the Extracellular Enzymatic Activities of Marine Pelagic Fungi. Journal of Fungi. 2024 Feb 13;10(2):152. doi: 10.3390/jof10020152